Publications
Peer-Reviewed
Google Scholar profile: https://scholar.google.com/citations?user=aOKCOXgAAAAJ&hl=en
13. Stahlke AR, Bitume EV, Özsoy ZA, Bean DW, Veillet A, Clark MI, Clark EI, Moran P, Hufbauer RA, & Hohenlohe PA. (2022). Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control. Evolutionary Applications, 15, 60– 77. https://doi.org/10.1111/eva.13325
12. Stahlke AR, Epstein B, Barbosa S, Margres MJ, Patton, AH, Hendricks SA, Veillet A, Fraik AK, Schönfeld B, Hamede RK, Ruiz-Aravena, M, McCallum HI, Jones ME, Storfer A, Hohenlohe PA. 2021. Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer. Proc. R. Soc. B. 288. 20210577. http://doi.org/10.1098/rspb.2021.0577.
11. Poelstra J, Salmona J, Tiley GP, Schüßler D, Blanco MB, Andriambeloson JB, Bouchez O, Campbell CR, Etter PD, Iribar A, Hohenlohe PA, Hunnicutt KE, Johnson EA, Larsen PA, Manzi S, Randrianambinina B, Rasolofoson DW, Stahlke AR, Weisrock D, Williams RC, Chikhi L, Louis EE, Radespiel U, Yoder AD. (2020). Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent. Systematic Biology. 70(2), 203-218. https://doi.org/10.1093/sysbio/syaa053.
10. Margres MJ, Ruiz-Aravena M, Hamede R, Chawla Kusum, Patton AH, Lawrance MF, Fraik AK, Stahlke AR, Davis BW, Ostrander EA, Jones ME, McCallum H, Paddison PJ, Hohenlohe PA, Hockenbery D, Storfer A. (2020). Spontaneous Tumor Regression in Tasmanian Devils Associated with RASL11A Activation. Genetics. 215(4). 1143-1152. https://doi.org/10.1534/genetics.120.303428 .
9. Kozakiewicz KP, Ricci L, Patton AH, Stahlke AR, Hendricks SA, Margres MJ, Ruiz-Aravena M, Hamilton DG, Hamede R, McCallum H, Jones ME, Hohenlohe PA, Storfer A. (2020). Comparative landscape genetics reveals differential effects of environment on host and pathogen genetic structure in Tasmanian devils (Sarcophilus harrisii) and their transmissible tumor. Molecular Ecology. 29(17). 3217– 3233. https://doi.org/10.1111/mec.15558.
8. Fraik AK, Margres MJ, Epstein B, Barbosa S, Jones M, Hendricks S, Schönfeld B, Stahlke AR, Veillet A, Hamede R, McCallum H, Lopez-Contreras E, Kallinen SJ, Hohenlohe PA, Kelley JL, Storfer A. (2020). Disease swamps molecular signatures of genetic‐environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations. Evolution. 74. 1392-1408.
7. Stahlke AR, Bell D, Dhendup T, Kern B, Pannoni S, Robinson Z, Strait J, Smith S, Hand BK, Hohenlohe P, Luikart G. Training the next generation of conservation genomicists: ConGen 2018 Workshop. (2020). Journal of Heredity, 111(2), 227–236. https://doi.org/10.1093/jhered/esaa001.
6. Patton, AH, Margres MJ, Stahlke AR, Hendricks S, Lewallen K, Hamede RK, Ruiz-Aravena, M, Ryder O, McCallum HI, Jones ME, Hohenlohe PA, Storfer A. Contemporary demographic reconstruction methods are robust to genome assembly quality: A case study in Tasmanian Devils. Genome Biology and Evolution. https://doi.org/10.1093/molbev/msz191.
5. Stahlke AR, Ozsoy AO, Bean DW, Hohenlohe PA. Mitochondrial genomes of Diorhabda carinata and Diorhabda carinulata, two beetle species introduced to N. America for biocontrol. Microbiology Resource Announcements. Aug 2019, 8 (35) e00690-19; https://doi.org/10.1128/MRA.00690-19
4. Margres MJ, Jones M, Epstein B, Kerlin DH, Comte S, Fox S, Fraik AK, Hendricks SA, Huxtable S, Lachish S, Lazenby B, O’Rourke SM, Stahlke AR , Wiench CG, Hamede R, Schonfeld B, McCallum H, Miller MR, Hohenlohe PA, Storfer, A. (2018). Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer. Molecular Ecology 27(21), pp.4189-4199. https://doi.org/10.1111/mec.14853.
3. Storfer A, Hohenlohe PA, Margres MJ, Patton A, Fraik AK, Lawrance M, Ricci LE, Stahlke AR, McCallum HI, Jones ME. (2018). The devil is in the details: Genomics of transmissible cancers in Tasmanian devils. PLoS pathogens, 14(8), e1007098.
2. Bitume EV, Bean DW, Stahlke AR, Hufbauer RA. (2017). Hybridization affects life-history traits and host specificity in Diorhabda spp. Biological Control, 111, 45-52. https://doi.org/10.1016/j.biocontrol.2016.07.004
1. Kennard, D, Louden, N, Gemoets, D, Ortega S, González E, Bean DW, Cunningham P, Johnson T, Rosen K, Stahlke AR. (2016). Tamarix dieback and vegetation patterns following release of the northern tamarisk beetle (Diorhabda carinulata) in western Colorado.
Biological control, 101, 114-122.
Technical Reports
Ozsoy AZ, Stahlke AR, Johnson M. (2021). Genetic Identification and Hybrid Analysis of Tamarisk Leaf Beetles (Diorhabda spp.). along the Rio Grande River NM watershed. Contract No. W912PP-15-D-0023, Task Order No. W912PP17F0013. Delivered to Tetra Tech, Albuquerque, NM.
Ozsoy AZ, Stahlke AR, Jamison L, Johnson M. (2019). Genetic Identification and Hybrid Analysis of Tamarisk Leaf Beetle (Diorhabda spp.). and Tamarisk Weevil (Coniatus spp.) along the Rio Grande River NM watershed. Contract No. W912PP-14-P-0041. Delivered to Army Corps of Engineers.
Ozsoy AZ, Stahlke AR, Jamison L, Johnson M. (2018). Genetic Identification and Hybrid Analysis of Tamarisk Leaf Beetle (Diorhabda spp.). and Tamarisk Weevil (Coniatus spp.) along the Rio Grande River NM watershed. Contract No. W912PP-14-P-0041. Delivered to Army Corps of Engineers.
Cortat G, Alderley C, Falgate, E, Stahlke AR, and Ribeiro S. (2016). Biological control of field bindweed, Convolvulus arvensis. Annual report 2015. CABI E-CH, Delémont, Switzerland, 8.
Cortat, G, Gerber E, Stahlke AR. Cloşca, C, and Hinz H.L. (2016). Biological control of garlic mustard, Alliaria petiolata. Annual report 2015. CABI E-CH, Delémont, Switzerland, 14.
Cortat, G, Stahlke AR, Alderley C, and Falgate E. (2016) Biological control of hawkweeds, Pilosella spp.. Annual report 2015. CABI E-CH, Delémont, Switzerland, 16.
Hinz, HL, Cloşca C., Castellan I, Heijs W, Morelon S, and Stahlke AR. (2016) Biological control of whitetops, Lepidium draba, L. chalepense and L. appelianum. Annual Report 2015. CABI E–CH, Delémont, Switzerland, 27.
Stutz S, Gerber E, Stahlke AR, Hinz HL, Cristofaro M, Augé M, Marini F, Di Cristina F. (2016) Biological control of perennial pepperweed, Lepidium latifolium. Annual report 2015. CABI E–CH, Delémont, Switzerland, 13.
Google Scholar profile: https://scholar.google.com/citations?user=aOKCOXgAAAAJ&hl=en
13. Stahlke AR, Bitume EV, Özsoy ZA, Bean DW, Veillet A, Clark MI, Clark EI, Moran P, Hufbauer RA, & Hohenlohe PA. (2022). Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control. Evolutionary Applications, 15, 60– 77. https://doi.org/10.1111/eva.13325
12. Stahlke AR, Epstein B, Barbosa S, Margres MJ, Patton, AH, Hendricks SA, Veillet A, Fraik AK, Schönfeld B, Hamede RK, Ruiz-Aravena, M, McCallum HI, Jones ME, Storfer A, Hohenlohe PA. 2021. Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer. Proc. R. Soc. B. 288. 20210577. http://doi.org/10.1098/rspb.2021.0577.
11. Poelstra J, Salmona J, Tiley GP, Schüßler D, Blanco MB, Andriambeloson JB, Bouchez O, Campbell CR, Etter PD, Iribar A, Hohenlohe PA, Hunnicutt KE, Johnson EA, Larsen PA, Manzi S, Randrianambinina B, Rasolofoson DW, Stahlke AR, Weisrock D, Williams RC, Chikhi L, Louis EE, Radespiel U, Yoder AD. (2020). Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent. Systematic Biology. 70(2), 203-218. https://doi.org/10.1093/sysbio/syaa053.
10. Margres MJ, Ruiz-Aravena M, Hamede R, Chawla Kusum, Patton AH, Lawrance MF, Fraik AK, Stahlke AR, Davis BW, Ostrander EA, Jones ME, McCallum H, Paddison PJ, Hohenlohe PA, Hockenbery D, Storfer A. (2020). Spontaneous Tumor Regression in Tasmanian Devils Associated with RASL11A Activation. Genetics. 215(4). 1143-1152. https://doi.org/10.1534/genetics.120.303428 .
9. Kozakiewicz KP, Ricci L, Patton AH, Stahlke AR, Hendricks SA, Margres MJ, Ruiz-Aravena M, Hamilton DG, Hamede R, McCallum H, Jones ME, Hohenlohe PA, Storfer A. (2020). Comparative landscape genetics reveals differential effects of environment on host and pathogen genetic structure in Tasmanian devils (Sarcophilus harrisii) and their transmissible tumor. Molecular Ecology. 29(17). 3217– 3233. https://doi.org/10.1111/mec.15558.
8. Fraik AK, Margres MJ, Epstein B, Barbosa S, Jones M, Hendricks S, Schönfeld B, Stahlke AR, Veillet A, Hamede R, McCallum H, Lopez-Contreras E, Kallinen SJ, Hohenlohe PA, Kelley JL, Storfer A. (2020). Disease swamps molecular signatures of genetic‐environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations. Evolution. 74. 1392-1408.
7. Stahlke AR, Bell D, Dhendup T, Kern B, Pannoni S, Robinson Z, Strait J, Smith S, Hand BK, Hohenlohe P, Luikart G. Training the next generation of conservation genomicists: ConGen 2018 Workshop. (2020). Journal of Heredity, 111(2), 227–236. https://doi.org/10.1093/jhered/esaa001.
6. Patton, AH, Margres MJ, Stahlke AR, Hendricks S, Lewallen K, Hamede RK, Ruiz-Aravena, M, Ryder O, McCallum HI, Jones ME, Hohenlohe PA, Storfer A. Contemporary demographic reconstruction methods are robust to genome assembly quality: A case study in Tasmanian Devils. Genome Biology and Evolution. https://doi.org/10.1093/molbev/msz191.
5. Stahlke AR, Ozsoy AO, Bean DW, Hohenlohe PA. Mitochondrial genomes of Diorhabda carinata and Diorhabda carinulata, two beetle species introduced to N. America for biocontrol. Microbiology Resource Announcements. Aug 2019, 8 (35) e00690-19; https://doi.org/10.1128/MRA.00690-19
4. Margres MJ, Jones M, Epstein B, Kerlin DH, Comte S, Fox S, Fraik AK, Hendricks SA, Huxtable S, Lachish S, Lazenby B, O’Rourke SM, Stahlke AR , Wiench CG, Hamede R, Schonfeld B, McCallum H, Miller MR, Hohenlohe PA, Storfer, A. (2018). Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer. Molecular Ecology 27(21), pp.4189-4199. https://doi.org/10.1111/mec.14853.
3. Storfer A, Hohenlohe PA, Margres MJ, Patton A, Fraik AK, Lawrance M, Ricci LE, Stahlke AR, McCallum HI, Jones ME. (2018). The devil is in the details: Genomics of transmissible cancers in Tasmanian devils. PLoS pathogens, 14(8), e1007098.
2. Bitume EV, Bean DW, Stahlke AR, Hufbauer RA. (2017). Hybridization affects life-history traits and host specificity in Diorhabda spp. Biological Control, 111, 45-52. https://doi.org/10.1016/j.biocontrol.2016.07.004
1. Kennard, D, Louden, N, Gemoets, D, Ortega S, González E, Bean DW, Cunningham P, Johnson T, Rosen K, Stahlke AR. (2016). Tamarix dieback and vegetation patterns following release of the northern tamarisk beetle (Diorhabda carinulata) in western Colorado.
Biological control, 101, 114-122.
Technical Reports
Ozsoy AZ, Stahlke AR, Johnson M. (2021). Genetic Identification and Hybrid Analysis of Tamarisk Leaf Beetles (Diorhabda spp.). along the Rio Grande River NM watershed. Contract No. W912PP-15-D-0023, Task Order No. W912PP17F0013. Delivered to Tetra Tech, Albuquerque, NM.
Ozsoy AZ, Stahlke AR, Jamison L, Johnson M. (2019). Genetic Identification and Hybrid Analysis of Tamarisk Leaf Beetle (Diorhabda spp.). and Tamarisk Weevil (Coniatus spp.) along the Rio Grande River NM watershed. Contract No. W912PP-14-P-0041. Delivered to Army Corps of Engineers.
Ozsoy AZ, Stahlke AR, Jamison L, Johnson M. (2018). Genetic Identification and Hybrid Analysis of Tamarisk Leaf Beetle (Diorhabda spp.). and Tamarisk Weevil (Coniatus spp.) along the Rio Grande River NM watershed. Contract No. W912PP-14-P-0041. Delivered to Army Corps of Engineers.
Cortat G, Alderley C, Falgate, E, Stahlke AR, and Ribeiro S. (2016). Biological control of field bindweed, Convolvulus arvensis. Annual report 2015. CABI E-CH, Delémont, Switzerland, 8.
Cortat, G, Gerber E, Stahlke AR. Cloşca, C, and Hinz H.L. (2016). Biological control of garlic mustard, Alliaria petiolata. Annual report 2015. CABI E-CH, Delémont, Switzerland, 14.
Cortat, G, Stahlke AR, Alderley C, and Falgate E. (2016) Biological control of hawkweeds, Pilosella spp.. Annual report 2015. CABI E-CH, Delémont, Switzerland, 16.
Hinz, HL, Cloşca C., Castellan I, Heijs W, Morelon S, and Stahlke AR. (2016) Biological control of whitetops, Lepidium draba, L. chalepense and L. appelianum. Annual Report 2015. CABI E–CH, Delémont, Switzerland, 27.
Stutz S, Gerber E, Stahlke AR, Hinz HL, Cristofaro M, Augé M, Marini F, Di Cristina F. (2016) Biological control of perennial pepperweed, Lepidium latifolium. Annual report 2015. CABI E–CH, Delémont, Switzerland, 13.